Profile of Dr. Sajib Chakraborty

... Name Dr. Sajib Chakraborty
Designation Assistant Professor
Last Degree Ph.D (Germany)
   

Education:

  • PhD: Proteomics and Systems Biology

German Cancer Research Center (DKFZ), Heidelberg, Germany

2012-02-08 to 2016-12-23 

  • MSc: Molecular Medicine 

University College London, London, United Kingdom

2009-09-01 to 2010-09-30 

  • MS: Biochemistry and Molecular Biology

University of Dhaka, Dhaka, Bangladesh

2005-01-01 to 2006-06-10 

  • BSc: Biochemistry and Molecular Biology

University of Dhaka, Dhaka, Bangladesh

2002-03-05 to 2005-12-01 

Experience:

  • Assistant Professor (Biochemistry and Molecular Biology)

University of Dhaka, Dhaka, Bangladesh

2016 to present 

  • Lecturer (Biochemistry and Molecular Biology)

University of Dhaka, Dhaka, Bangladesh

2009 to 2016

  • Research Fellow: Computational Proteomics

Imperial College London, London, United Kingdom

2009-12-01 to 2010-06-10 

  • Research officer (Immunology)

International Centre for Diarrhoeal Disease Research, Dhaka, Dhaka District, Bangladesh

2008 to 2009 

 

 

 

 

 

 

Publications:

2017

  1. Chakraborty S and Shekhar, HU. Applications of Mass-Spectrometry Based Quantitative Proteomics to Understand Complex Cellular Functions and Cell Fate Decisions. Biomed J Sci & Tech Res. 1(1)-2017. BJSTR.MS.ID.000144
  2. Chakraborty S and Shekhar, HU. Application of Engineering in Biomedical Science: The Window of Opportunity. Curr Trends Biomedical Eng & Biosci.Volume 1 Issue 5 - February 2017
  3. Chakraborty S and Shekhar, HU. The New Age of Cytopathology: Applications of MALDI Imaging and Super-Resolution Microscopy. Adv Cytol Pathol 2017, 2(2): 00014.
  4. Adlung L, Kar S, Wagner MC, She B, Chakraborty S, Bao J, Lattermann S, Boerries M, Busch B, Wuchter P, Ho AD, Timmer J, Schilling M, Höfer T and Klingmüller U. Protein abundance of AKT and ERK pathway components governs cell type-specific regulation of proliferation. Mol Syst Biol. 2017, 13: 904

 

2015

  1. Rabby A, Chakraborty S, Rahman A, Rahman SS, Soad S , Chanda KF, Chakravorty R. Identification of the positively selected genes governing host pathogen arm race in Vibrio sp. through comparative genomics approach. Biojournal of Science and Technology. Vol.2:2015

 

2014

  1. Khan MK, Zaman S, Chakraborty S, Chakravorty R, Alam MM, Bhuiyan TR, Rahman MJ, Fernández C, Qadri F, Seraj ZI. In silico predicted mycobacterial epitope elicits in vitro T-cell responses. Mol Immunol. 2014 Sep;61(1):16-22.
  2. Chakraborty S, Rahman T, Chakravorty R. Characterization of the Protective HIV-1 CTL Epitopes and the Corresponding HLA Class I Alleles: A Step towards Designing CTL Based HIV-1 Vaccine. Adv Virol. 2014;2014:321974.
  3. Al-Shoeb MA, Rahman MH, Chakraborty S, Faisal M ,Waise TMZ, Hassan F, Kabir MF and Hossain MA. Cytogenetic Assays of Genotoxic Effects and Cancer Risk of Chromium on Tannery Workers in Bangladesh. Journal of Biology 2014, Vol. 02, Issue 02, pp. 39-46

2013

  1. Islam MR, Zaman A, Jahan I, Chakravorty R, Chakraborty S. In silico QSAR analysis of quercetin reveals its potential as therapeutic drug for Alzheimer's disease. J Young Pharm. 2013 Dec;5(4):173-9.
  2. Chakraborty S, Rahman T, Chakravorty R, Kuchta A, Rabby A, Sahiuzzaman M. HLA supertypes contribute in HIV type 1 cytotoxic T lymphocyte epitope clustering in Nef and Gag proteins. AIDS Res Hum Retroviruses. 2013 Feb;29(2):270-8.

 

2012

  1. Chakraborty S, Rahman T. The difficulties in cancer treatment.

Cancermedicalscience. 2012 Nov 14;6:ed16. doi: 10.3332/ecancer.2012.ed16. 2012.

 

2010

  1. Chakraborty S, Snijders AP, Chakravorty R, Ahmed M, Tarek AM, Hossain MA. Comparative network clustering of direct repeats (DRs) and cas genes confirms the possibility of the horizontal transfer of CRISPR locus among bacteria. Mol Phylogenet Evol. 2010 Sep;56(3):878-87.
  2. Chakraborty S, Chakravorty R, Ahmed M, Rahman A, Waise TM, Hassan F, Rahman M, Shamsuzzaman S. A computational approach for identification of epitopes in dengue virus envelope protein: a step towards designing a universal dengue vaccine targeting endemic regions. In Silico Biol. 2010;10(5-6):235-46. doi: 10.3233/ISB-2010-0435.
  3. Begum YA, Chakraborty S, Chowdhury A, Ghosh AN, Nair GB, Sack RB, Svennerholm AM, Qadri F: Isolation of a bacteriophage specific for CS7-expressing strains of enterotoxigenic Escherichia coliJ Med Microbiol 2010, 59:266-272

 

2009

  1. Chakraborty S, Waise TM, Hassan F, Kabir Y, Smith MA, Arif M. Assessment of the evolutionary origin and possibility of CRISPR-Cas (CASS) mediated RNA interference pathway in Vibrio cholerae O395. In Silico Biol. 2009;9(4):245-54.
  2. Chakraborty S, Arif M, Waise TM, Naznin F, Hassan F., Faisal M, Kabir M.F., Khan MMH, Mazumder MEH, Kabir Y, Smith MA: A novel approach for predicting the evolutionary time of acquisition of foreign genes by bacteria: Application of codon usage analyses. Bioscience Hypotheses 2009, 2:217-222 (doi:210.1016/j.bihy.2008.1012.1003).
  3. Khaleque MA, Arif M, Chakraborty S, Waise Z, Hassan F, Kabir F, Faisal M, Kabir Y, Rahman S: Lead dose-dependently induces memory impairment, DNA damage and lipid peroxidation in rat. Neuroscience Research. Vol 65, 2009: p-110.

 

Teaching:

From 2009- present:

As Lecturer and Assistant professor

For BS and MS courses (Biochemistry and Molecular Biology)

University of Dhaka, Dhaka, Bangladesh

From 2012 to 2016:

As practical course instructor for quantitative proteomics.

For MS course (Cancer Biology and Systems Biology)

German Cancer Research Center, Heidelberg University, Germany

Fellowships/Scholarships and Awards:

  1. Young Fellowship Program 2018, IUBMB
  2. Helmholtz graduate Scholarship, Germany: 2012-2016
  3. Commonwealth Scholarship, United Kingdom: 2009-2010
  4. Deans Award, Bangladesh
  5. Dhaka Board Scholarship, Bangladesh

Research Interest:

  • Proteomics and Systems Biology
  • Transcriptomics and Proteomics study of recurrent pregnancy loss (RPL)
  • Multi Omics (genomics, epigenomics, transcriptomics and proteomics) data-integration and analysis to elucidate underlying mechanism of cancer progression, metastasis and chemotherapy-resistance
  • Data-driven biomarker discovery for cancer diagnosis
  • Analysis of CRISPR-Cas driven phage-host interaction and multi-drug resistant bacteria

Teaching:

From 2009- present:

As Lecturer and Assistant professor

For BS and MS courses (Biochemistry and Molecular Biology)

University of Dhaka, Dhaka, Bangladesh

From 2012 to 2016:

As practical course instructor for quantitative proteomics.

For MS course (Cancer Biology and Systems Biology)

German Cancer Research Center, Heidelberg University, Germany

Name: Sajib Chakraborty

Designation: Assistant Professor

 

ORCID: https://orcid.org/0000-0002-8900-503X

 

Education:

  • PhD: Proteomics and Systems Biology

German Cancer Research Center (DKFZ), Heidelberg, Germany

2012-02-08 to 2016-12-23 

  • Research Fellow: Computational Proteomics

Imperial College London, London, United Kingdom

2009-12-01 to 2010-06-10 

  • MSc: Molecular Medicine 

University College London, London, United Kingdom

2009-09-01 to 2010-09-30 

  • MS: Biochemistry and Molecular Biology

University of Dhaka, Dhaka, Bangladesh

2005-01-01 to 2006-06-10 

  • BSc: Biochemistry and Molecular Biology

University of Dhaka, Dhaka, Bangladesh

2002-03-05 to 2005-12-01 

 

Employment:

  • Assistant Professor (Biochemistry and Molecular Biology)

University of Dhaka, Dhaka, Bangladesh

2016-12-26 to present |

  • Research officer (Immunology)

International Centre for Diarrhoeal Disease Research, Dhaka, Dhaka District, Bangladesh

2008 to 2009 

 

Fellowships and Scholarships:

1. Commonwealth Scholarship, United Kingdom: 2009-2010

2. Helmholtz graduate Scholarship, Germany: 2012-2016

3. Deans Award, Bangladesh

4. Dhaka Board Scholarship, Bangladesh

 

Publications:

2017

  1. Chakraborty S and Shekhar, HU. Applications of Mass-Spectrometry Based Quantitative Proteomics to Understand Complex Cellular Functions and Cell Fate Decisions. Biomed J Sci & Tech Res. 1(1)-2017. BJSTR.MS.ID.000144
  2. Chakraborty S and Shekhar, HU. Application of Engineering in Biomedical Science: The Window of Opportunity. Curr Trends Biomedical Eng & Biosci. Volume 1 Issue 5 - February 2017
  3. Chakraborty S and Shekhar, HU. The New Age of Cytopathology: Applications of MALDI Imaging and Super-Resolution Microscopy. Adv Cytol Pathol 2017, 2(2): 00014.
  4. Adlung L, Kar S, Wagner MC, She B, Chakraborty S, Bao J, Lattermann S, Boerries M, Busch B, Wuchter P, Ho AD, Timmer J, Schilling M, Höfer T and Klingmüller U. Protein abundance of AKT and ERK pathway components governs cell type-specific regulation of proliferation. Mol Syst Biol. 2017, 13: 904

 

     2015

  1. Rabby A, Chakraborty S, Rahman A, Rahman SS, Soad S , Chanda KF, Chakravorty R. Identification of the positively selected genes governing host pathogen arm race in Vibrio sp. through comparative genomics approach. Biojournal of Science and Technology. Vol.2:2015

 

2014

  1. Khan MK, Zaman S, Chakraborty S, Chakravorty R, Alam MM, Bhuiyan TR, Rahman MJ, Fernández C, Qadri F, Seraj ZI. In silico predicted mycobacterial epitope elicits in vitro T-cell responses. Mol Immunol. 2014 Sep;61(1):16-22.
  2. Chakraborty S, Rahman T, Chakravorty R. Characterization of the Protective HIV-1 CTL Epitopes and the Corresponding HLA Class I Alleles: A Step towards Designing CTL Based HIV-1 Vaccine. Adv Virol. 2014;2014:321974.
  3. Al-Shoeb MA, Rahman MH, Chakraborty S, Faisal M ,Waise TMZ, Hassan F, Kabir MF and Hossain MA. Cytogenetic Assays of Genotoxic Effects and Cancer Risk of Chromium on Tannery Workers in Bangladesh. Journal of Biology 2014, Vol. 02, Issue 02, pp. 39-46

2013

  1. Islam MR, Zaman A, Jahan I, Chakravorty R, Chakraborty S. In silico QSAR analysis of quercetin reveals its potential as therapeutic drug for Alzheimer's disease. J Young Pharm. 2013 Dec;5(4):173-9.
  2. Chakraborty S, Rahman T, Chakravorty R, Kuchta A, Rabby A, Sahiuzzaman M. HLA supertypes contribute in HIV type 1 cytotoxic T lymphocyte epitope clustering in Nef and Gag proteins. AIDS Res Hum Retroviruses. 2013 Feb;29(2):270-8.

 

2012

  1. Chakraborty S, Rahman T. The difficulties in cancer treatment.

Cancermedicalscience. 2012 Nov 14;6:ed16. doi: 10.3332/ecancer.2012.ed16. 2012.

 

2010

  1. Chakraborty S, Snijders AP, Chakravorty R, Ahmed M, Tarek AM, Hossain MA. Comparative network clustering of direct repeats (DRs) and cas genes confirms the possibility of the horizontal transfer of CRISPR locus among bacteria. Mol Phylogenet Evol. 2010 Sep;56(3):878-87.
  2. Chakraborty S, Chakravorty R, Ahmed M, Rahman A, Waise TM, Hassan F, Rahman M, Shamsuzzaman S. A computational approach for identification of epitopes in dengue virus envelope protein: a step towards designing a universal dengue vaccine targeting endemic regions. In Silico Biol. 2010;10(5-6):235-46. doi: 10.3233/ISB-2010-0435.
  3. Begum YA, Chakraborty S, Chowdhury A, Ghosh AN, Nair GB, Sack RB, Svennerholm AM, Qadri F: Isolation of a bacteriophage specific for CS7-expressing strains of enterotoxigenic Escherichia coli. J Med Microbiol 2010, 59:266-272

 

2009

  1. Chakraborty S, Waise TM, Hassan F, Kabir Y, Smith MA, Arif M. Assessment of the evolutionary origin and possibility of CRISPR-Cas (CASS) mediated RNA interference pathway in Vibrio cholerae O395. In Silico Biol. 2009;9(4):245-54.
  2. Chakraborty S, Arif M, Waise TM, Naznin F, Hassan F., Faisal M, Kabir M.F., Khan MMH, Mazumder MEH, Kabir Y, Smith MA: A novel approach for predicting the evolutionary time of acquisition of foreign genes by bacteria: Application of codon usage analyses. Bioscience Hypotheses 2009, 2:217-222 (doi:210.1016/j.bihy.2008.1012.1003).
  3. Khaleque MA, Arif M, Chakraborty S, Waise Z, Hassan F, Kabir F, Faisal M, Kabir Y, Rahman S: Lead dose-dependently induces memory impairment, DNA damage and lipid peroxidation in rat. Neuroscience Research. Vol 65, 2009: p-110.